Variant report
| Variant | rs1564908 |
|---|---|
| Chromosome Location | chr3:56258799-56258800 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11715314 | 0.96[EUR][1000 genomes] |
| rs12493980 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13091032 | 0.96[EUR][1000 genomes] |
| rs1349616 | 1.00[EUR][1000 genomes] |
| rs1352011 | 0.96[EUR][1000 genomes] |
| rs1452205 | 1.00[EUR][1000 genomes] |
| rs1452211 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1452219 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1466177 | 1.00[EUR][1000 genomes] |
| rs1564906 | 0.87[EUR][1000 genomes] |
| rs2046450 | 0.96[EUR][1000 genomes] |
| rs2046452 | 1.00[EUR][1000 genomes] |
| rs2053956 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2101321 | 0.96[EUR][1000 genomes] |
| rs2167620 | 1.00[EUR][1000 genomes] |
| rs2316479 | 0.96[EUR][1000 genomes] |
| rs2316483 | 1.00[EUR][1000 genomes] |
| rs2873169 | 0.96[EUR][1000 genomes] |
| rs4393875 | 0.96[EUR][1000 genomes] |
| rs4585163 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4974125 | 0.93[EUR][1000 genomes] |
| rs4974177 | 1.00[EUR][1000 genomes] |
| rs6445767 | 0.96[EUR][1000 genomes] |
| rs6766369 | 0.96[EUR][1000 genomes] |
| rs6776414 | 1.00[EUR][1000 genomes] |
| rs6786348 | 0.96[EUR][1000 genomes] |
| rs6800915 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6801004 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6802107 | 1.00[EUR][1000 genomes] |
| rs7634869 | 0.96[EUR][1000 genomes] |
| rs9812767 | 0.96[EUR][1000 genomes] |
| rs9823389 | 0.96[EUR][1000 genomes] |
| rs9824530 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs982860 | 1.00[EUR][1000 genomes] |
| rs9839130 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009709 | chr3:56000827-56294945 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:56252000-56272200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:56254800-56280600 | Weak transcription | H9 Cell Line | embryonic stem cell |
