Variant report

Variant	rs13091032
Chromosome Location	chr3:56205139-56205140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11715314	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12493980	0.96[EUR][1000 genomes]
rs1349616	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1352011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1452205	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1452211	0.96[EUR][1000 genomes]
rs1452219	0.96[EUR][1000 genomes]
rs1466177	0.96[EUR][1000 genomes]
rs1564906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1564908	0.96[EUR][1000 genomes]
rs1839953	0.85[AFR][1000 genomes]
rs2046450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046452	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2053956	0.96[EUR][1000 genomes]
rs2101321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167620	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2316479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2316483	0.96[EUR][1000 genomes]
rs2873169	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4393875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4585163	0.93[EUR][1000 genomes]
rs4974125	0.89[EUR][1000 genomes]
rs4974177	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6445767	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6766369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6776414	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6786348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800915	0.93[EUR][1000 genomes]
rs6801004	0.93[EUR][1000 genomes]
rs6802107	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7634869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812767	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9823389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9824530	0.93[EUR][1000 genomes]
rs982860	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9839130	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522496	chr3:56197528-56206591	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56204400-56205800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:56204400-56206200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56204400-56207200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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