Variant report

Variant	rs1839953
Chromosome Location	chr3:56199401-56199402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13091032	0.85[AFR][1000 genomes]
rs1352011	0.85[AFR][1000 genomes]
rs1564906	0.84[AFR][1000 genomes]
rs2046450	0.88[AFR][1000 genomes]
rs2101321	0.85[AFR][1000 genomes]
rs2873169	0.83[AFR][1000 genomes]
rs6766369	0.85[AFR][1000 genomes]
rs6786348	0.85[AFR][1000 genomes]
rs7634869	0.85[AFR][1000 genomes]
rs9823389	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522496	chr3:56197528-56206591	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56192400-56204200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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