Variant report

Variant	rs2046452
Chromosome Location	chr3:56191374-56191375
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11715314	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12493980	1.00[EUR][1000 genomes]
rs13091032	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1349616	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1352011	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1452205	1.00[EUR][1000 genomes]
rs1452211	1.00[EUR][1000 genomes]
rs1452219	1.00[EUR][1000 genomes]
rs1466177	1.00[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap]
rs1564906	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1564908	1.00[EUR][1000 genomes]
rs2046450	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2053956	1.00[EUR][1000 genomes]
rs2101321	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2167620	1.00[EUR][1000 genomes]
rs2316479	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2316483	1.00[EUR][1000 genomes]
rs2873169	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4393875	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4585163	0.96[EUR][1000 genomes]
rs4974117	1.00[CEU][hapmap]
rs4974125	0.93[EUR][1000 genomes]
rs4974177	1.00[EUR][1000 genomes]
rs6445767	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6766369	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6776414	1.00[EUR][1000 genomes]
rs6786348	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6800915	0.96[EUR][1000 genomes]
rs6801004	0.96[EUR][1000 genomes]
rs6802107	1.00[EUR][1000 genomes]
rs7634869	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9812767	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9823389	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9824530	0.96[EUR][1000 genomes]
rs982860	1.00[EUR][1000 genomes]
rs9839130	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56190600-56191800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56191000-56192400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:56191200-56191600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:56191200-56191600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:56191200-56191800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:56191200-56192000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:56191200-56192200	Enhancers	Placenta	Placenta
8	chr3:56191200-56192400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:56191200-56192600	Enhancers	Primary monocytes fromperipheralblood	blood

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