Variant report

Variant	rs4974117
Chromosome Location	chr3:56103287-56103288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1349616	1.00[CEU][hapmap]
rs1379713	1.00[AMR][1000 genomes]
rs1485671	0.95[EUR][1000 genomes]
rs1519027	0.86[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1949478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046450	1.00[CEU][hapmap]
rs2316457	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2316459	0.81[EUR][1000 genomes]
rs2873169	1.00[CEU][hapmap]
rs4974116	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6445766	0.95[EUR][1000 genomes]
rs7617717	1.00[EUR][1000 genomes]
rs9855895	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56103200-56103800	Enhancers	Fetal Intestine Small	intestine
2	chr3:56103200-56104400	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links