Variant report

Variant	rs1379713
Chromosome Location	chr3:56054627-56054628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023882	0.93[AFR][1000 genomes]
rs1349616	1.00[CEU][hapmap]
rs1350412	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1379716	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs1949478	0.85[AMR][1000 genomes]
rs2046450	1.00[CEU][hapmap]
rs2316457	0.85[AMR][1000 genomes]
rs2873169	1.00[CEU][hapmap]
rs4974116	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4974117	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4974158	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6445761	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7617717	0.81[AFR][1000 genomes]
rs7635508	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9855895	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012098	chr3:56040905-56055908	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56048600-56059000	Weak transcription	Fetal Intestine Large	intestine
2	chr3:56052000-56055200	Enhancers	Brain Germinal Matrix	brain
3	chr3:56052600-56054800	Enhancers	Fetal Heart	heart
4	chr3:56052600-56055000	Enhancers	Ovary	ovary
5	chr3:56052600-56055200	Enhancers	Fetal Stomach	stomach
6	chr3:56053600-56055200	Enhancers	Fetal Lung	lung
7	chr3:56053800-56057800	Weak transcription	Pancreas	Pancrea
8	chr3:56054200-56059000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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