Variant report

Variant	rs1350412
Chromosome Location	chr3:56027309-56027310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1023882	0.95[AFR][1000 genomes]
rs1349616	1.00[CEU][hapmap]
rs1379713	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1379716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap]
rs2046450	1.00[CEU][hapmap]
rs2873169	1.00[CEU][hapmap]
rs4974117	1.00[CEU][hapmap]
rs4974158	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6445761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56021400-56028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:56021400-56034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:56022600-56028200	Weak transcription	Fetal Kidney	kidney
4	chr3:56023400-56032400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:56023600-56028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:56023600-56028200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56023600-56034600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:56023800-56028000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:56023800-56032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:56025000-56029800	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links