Variant report

Variant	rs4974158
Chromosome Location	chr3:56021110-56021111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1023882	0.93[AFR][1000 genomes]
rs1349616	1.00[CEU][hapmap]
rs1350412	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1379713	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1379716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap]
rs2046450	1.00[CEU][hapmap]
rs2873169	1.00[CEU][hapmap]
rs4974117	1.00[CEU][hapmap]
rs6445761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635508	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:56013200-56022200	Weak transcription	Pancreas	Pancrea
3	chr3:56019000-56022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:56020200-56021200	Weak transcription	Fetal Stomach	stomach
5	chr3:56020400-56021400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:56020600-56021400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:56020600-56021400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:56020600-56021400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:56020600-56021600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:56020600-56023600	Enhancers	Ovary	ovary
11	chr3:56020800-56021400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:56021000-56021400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:56021000-56021600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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