Variant report

Variant	rs1466178
Chromosome Location	chr3:56223717-56223718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1519030	0.85[ASN][1000 genomes]
rs17056469	0.85[ASN][1000 genomes]
rs17056493	0.80[ASN][1000 genomes]
rs2171073	0.82[EUR][1000 genomes]
rs28397662	0.85[ASN][1000 genomes]
rs28485564	0.80[ASN][1000 genomes]
rs28496913	0.85[ASN][1000 genomes]
rs56141852	0.90[ASN][1000 genomes]
rs6779216	0.96[EUR][1000 genomes]
rs6788505	0.90[ASN][1000 genomes]
rs6800915	0.84[AFR][1000 genomes]
rs6801004	0.84[AFR][1000 genomes]
rs73078492	0.80[ASN][1000 genomes]
rs9311597	0.85[ASN][1000 genomes]
rs9811952	0.80[ASN][1000 genomes]
rs9820348	0.85[ASN][1000 genomes]
rs9824306	0.90[ASN][1000 genomes]
rs9830503	0.85[ASN][1000 genomes]
rs9839130	0.86[AFR][1000 genomes]
rs9844377	0.85[ASN][1000 genomes]
rs9853630	0.80[ASN][1000 genomes]
rs9862097	0.85[ASN][1000 genomes]
rs9873343	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56219600-56224200	Weak transcription	Fetal Intestine Large	intestine
2	chr3:56222800-56224800	Enhancers	Fetal Muscle Leg	muscle
3	chr3:56223400-56224000	Enhancers	HSMMtube	muscle
4	chr3:56223600-56223800	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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