Variant report

Variant	rs9811952
Chromosome Location	chr3:56169180-56169181
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1023970	0.85[ASN][1000 genomes]
rs1466178	0.80[ASN][1000 genomes]
rs1519030	0.95[ASN][1000 genomes]
rs17056469	0.95[ASN][1000 genomes]
rs17056493	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397662	0.95[ASN][1000 genomes]
rs28471370	0.85[ASN][1000 genomes]
rs28485564	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496913	0.95[ASN][1000 genomes]
rs28689027	0.85[ASN][1000 genomes]
rs56141852	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6788505	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73078492	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078494	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73091055	0.95[ASN][1000 genomes]
rs9311597	0.95[ASN][1000 genomes]
rs9820348	0.85[ASN][1000 genomes]
rs9824306	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9830503	0.95[ASN][1000 genomes]
rs9833446	0.85[ASN][1000 genomes]
rs9844377	0.95[ASN][1000 genomes]
rs9853630	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862097	0.95[ASN][1000 genomes]
rs9873343	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9876574	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56157800-56175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56160000-56170600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:56163000-56171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:56165200-56170600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:56166400-56170400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:56166400-56171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:56166400-56173600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:56166600-56170200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56166600-56170200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:56166600-56171200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:56166800-56169400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:56167400-56170600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:56168000-56169800	Weak transcription	HMEC	breast
14	chr3:56168200-56169800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:56168200-56169800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:56168200-56169800	Weak transcription	NHEK	skin
17	chr3:56168200-56170200	Weak transcription	Osteobl	bone
18	chr3:56168200-56171000	Weak transcription	HUVEC	blood vessel
19	chr3:56168200-56171000	Weak transcription	NH-A	brain
20	chr3:56168200-56171600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:56168400-56170000	Weak transcription	A549	lung
22	chr3:56168400-56171200	Weak transcription	HSMMtube	muscle
23	chr3:56168600-56171400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:56168800-56170600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:56168800-56170800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:56168800-56170800	Weak transcription	HSMM	muscle
27	chr3:56168800-56182400	Weak transcription	H9 Cell Line	embryonic stem cell

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