Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1466178	0.90[ASN][1000 genomes]
rs1519030	0.85[ASN][1000 genomes]
rs17056469	0.85[ASN][1000 genomes]
rs17056493	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28397662	0.85[ASN][1000 genomes]
rs28485564	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28496913	0.85[ASN][1000 genomes]
rs56141852	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078492	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73078494	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73091055	0.85[ASN][1000 genomes]
rs9311597	0.85[ASN][1000 genomes]
rs9811952	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820348	0.85[ASN][1000 genomes]
rs9830503	0.85[ASN][1000 genomes]
rs9844377	0.85[ASN][1000 genomes]
rs9853630	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9862097	0.85[ASN][1000 genomes]
rs9873343	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56181600-56185000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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