Variant report

Variant	rs17056469
Chromosome Location	chr3:56154378-56154379
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10461036	0.90[EUR][1000 genomes]
rs10510779	0.89[EUR][1000 genomes]
rs10510780	0.89[EUR][1000 genomes]
rs10510781	0.90[EUR][1000 genomes]
rs11428238	0.87[EUR][1000 genomes]
rs13315826	0.96[EUR][1000 genomes]
rs13326476	0.96[EUR][1000 genomes]
rs13326628	0.96[EUR][1000 genomes]
rs1466178	0.85[ASN][1000 genomes]
rs1519030	1.00[ASN][1000 genomes]
rs17056472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17056493	0.95[ASN][1000 genomes]
rs17235263	0.89[EUR][1000 genomes]
rs17235291	0.89[EUR][1000 genomes]
rs17235305	0.89[EUR][1000 genomes]
rs17235368	0.96[EUR][1000 genomes]
rs17235375	0.89[EUR][1000 genomes]
rs17235382	0.96[EUR][1000 genomes]
rs17235389	0.96[EUR][1000 genomes]
rs17235396	0.90[EUR][1000 genomes]
rs17825159	0.89[EUR][1000 genomes]
rs17825183	0.89[EUR][1000 genomes]
rs17825189	0.89[EUR][1000 genomes]
rs17825201	0.96[EUR][1000 genomes]
rs17825207	0.89[EUR][1000 genomes]
rs17825213	0.89[EUR][1000 genomes]
rs17825219	0.96[EUR][1000 genomes]
rs17825278	0.89[EUR][1000 genomes]
rs1982766	0.89[EUR][1000 genomes]
rs28397662	1.00[ASN][1000 genomes]
rs28407987	0.84[ASN][1000 genomes]
rs28463735	0.89[EUR][1000 genomes]
rs28464790	0.96[EUR][1000 genomes]
rs28485564	0.95[ASN][1000 genomes]
rs28496913	1.00[ASN][1000 genomes]
rs28689027	0.90[ASN][1000 genomes]
rs35563958	0.89[EUR][1000 genomes]
rs56101867	0.89[EUR][1000 genomes]
rs56141852	0.85[ASN][1000 genomes]
rs58375176	0.89[EUR][1000 genomes]
rs61401343	0.91[EUR][1000 genomes]
rs6788505	0.85[ASN][1000 genomes]
rs6800841	0.90[EUR][1000 genomes]
rs6807938	0.87[EUR][1000 genomes]
rs73078492	0.95[ASN][1000 genomes]
rs73078494	0.90[ASN][1000 genomes]
rs73089299	0.96[EUR][1000 genomes]
rs73091008	0.86[EUR][1000 genomes]
rs73091011	0.90[EUR][1000 genomes]
rs73091012	0.90[EUR][1000 genomes]
rs73091052	0.89[EUR][1000 genomes]
rs73091055	0.90[ASN][1000 genomes]
rs73091061	0.89[EUR][1000 genomes]
rs73091207	0.89[EUR][1000 genomes]
rs73091213	0.95[EUR][1000 genomes]
rs73091231	0.96[EUR][1000 genomes]
rs73091236	0.86[EUR][1000 genomes]
rs73091241	0.91[EUR][1000 genomes]
rs73091242	0.87[EUR][1000 genomes]
rs7625220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7625230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7625422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7629639	0.91[EUR][1000 genomes]
rs7629769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7632887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7632901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7651932	0.89[EUR][1000 genomes]
rs923127	0.89[EUR][1000 genomes]
rs923128	0.89[EUR][1000 genomes]
rs9311594	0.95[EUR][1000 genomes]
rs9311595	0.96[EUR][1000 genomes]
rs9311596	0.94[EUR][1000 genomes]
rs9311597	1.00[ASN][1000 genomes]
rs9810107	0.96[EUR][1000 genomes]
rs9810354	0.88[EUR][1000 genomes]
rs9811060	0.96[EUR][1000 genomes]
rs9811789	0.96[EUR][1000 genomes]
rs9811790	0.96[EUR][1000 genomes]
rs9811952	0.95[ASN][1000 genomes]
rs9814900	0.96[EUR][1000 genomes]
rs9815611	0.96[EUR][1000 genomes]
rs9817131	0.89[EUR][1000 genomes]
rs9817492	0.96[EUR][1000 genomes]
rs9817542	0.96[EUR][1000 genomes]
rs9819890	0.90[EUR][1000 genomes]
rs9820348	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9820493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9824306	0.85[ASN][1000 genomes]
rs9827514	0.96[EUR][1000 genomes]
rs9828337	0.96[EUR][1000 genomes]
rs9830503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831925	0.94[EUR][1000 genomes]
rs9837290	0.96[EUR][1000 genomes]
rs9838245	0.89[EUR][1000 genomes]
rs9842617	0.90[EUR][1000 genomes]
rs9844291	0.96[EUR][1000 genomes]
rs9844377	1.00[ASN][1000 genomes]
rs9850438	0.81[EUR][1000 genomes]
rs9853630	0.95[ASN][1000 genomes]
rs9854960	0.89[EUR][1000 genomes]
rs9855148	0.96[EUR][1000 genomes]
rs9855836	0.96[EUR][1000 genomes]
rs9857687	0.90[EUR][1000 genomes]
rs9860909	0.96[EUR][1000 genomes]
rs9861486	0.96[EUR][1000 genomes]
rs9862097	1.00[ASN][1000 genomes]
rs9862215	0.96[EUR][1000 genomes]
rs9865648	0.89[EUR][1000 genomes]
rs9865958	0.89[EUR][1000 genomes]
rs9866234	0.89[EUR][1000 genomes]
rs9866951	0.96[EUR][1000 genomes]
rs9869654	0.96[EUR][1000 genomes]
rs9870248	0.94[EUR][1000 genomes]
rs9870989	0.96[EUR][1000 genomes]
rs9871223	0.96[EUR][1000 genomes]
rs9873343	0.85[ASN][1000 genomes]
rs9874507	0.95[EUR][1000 genomes]
rs9874662	0.93[EUR][1000 genomes]
rs9880824	0.96[EUR][1000 genomes]
rs9881126	0.96[EUR][1000 genomes]
rs9881968	0.89[EUR][1000 genomes]
rs9882373	0.96[EUR][1000 genomes]
rs9883636	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56151600-56155800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:56151800-56156800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:56152000-56155800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:56152000-56156200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:56152000-56156800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:56152200-56155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:56152200-56155800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:56152200-56156000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:56152200-56157200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:56152400-56155800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:56152400-56156000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:56152400-56156000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:56152400-56156000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:56152400-56156200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:56153000-56154600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:56153000-56154800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:56153000-56154800	Enhancers	NHDF-Ad	bronchial
18	chr3:56153000-56155000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:56153200-56154600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:56153200-56154600	Enhancers	NHLF	lung
21	chr3:56153200-56154800	Enhancers	Osteobl	bone
22	chr3:56153200-56155000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:56153200-56155200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:56153200-56155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:56153600-56154400	Enhancers	HMEC	breast
26	chr3:56153600-56154400	Enhancers	HSMM	muscle
27	chr3:56153600-56154600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:56153800-56154400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:56154000-56154400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:56154200-56154600	Enhancers	NHEK	skin
31	chr3:56154200-56159000	Weak transcription	A549	lung

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