Variant report

Variant	rs28689027
Chromosome Location	chr3:56177498-56177499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13323783	0.89[EUR][1000 genomes]
rs13324556	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1452206	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1452207	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1519030	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1519031	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17056469	0.90[ASN][1000 genomes]
rs17056493	0.85[ASN][1000 genomes]
rs28397662	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28407987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28485564	0.85[ASN][1000 genomes]
rs28496913	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28583826	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28655135	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28780379	0.89[EUR][1000 genomes]
rs28888991	0.84[EUR][1000 genomes]
rs73078492	0.85[ASN][1000 genomes]
rs73078494	0.81[ASN][1000 genomes]
rs73091055	0.81[ASN][1000 genomes]
rs9311597	0.90[ASN][1000 genomes]
rs9810412	0.89[EUR][1000 genomes]
rs9811952	0.85[ASN][1000 genomes]
rs9815714	0.89[EUR][1000 genomes]
rs9816050	0.89[EUR][1000 genomes]
rs9818484	0.81[EUR][1000 genomes]
rs9820348	0.80[ASN][1000 genomes]
rs9821284	0.89[EUR][1000 genomes]
rs9824691	0.81[EUR][1000 genomes]
rs9830503	0.90[ASN][1000 genomes]
rs9834432	0.81[EUR][1000 genomes]
rs9834759	0.81[EUR][1000 genomes]
rs9840027	0.81[EUR][1000 genomes]
rs9842348	0.89[EUR][1000 genomes]
rs9843455	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9844377	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9844806	0.84[EUR][1000 genomes]
rs9853630	0.85[ASN][1000 genomes]
rs9862097	0.90[ASN][1000 genomes]
rs9865282	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9867542	0.89[EUR][1000 genomes]
rs9867636	0.84[EUR][1000 genomes]
rs9878055	0.89[EUR][1000 genomes]
rs9879781	0.84[EUR][1000 genomes]
rs9880997	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56168800-56182400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:56171400-56179400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56171600-56179000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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