Variant report

Variant	rs13323783
Chromosome Location	chr3:56254133-56254134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56253503..56256093-chr3:56260101..56261659,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13324556	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452206	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452207	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519030	0.81[EUR][1000 genomes]
rs1519031	0.85[EUR][1000 genomes]
rs28397662	0.81[EUR][1000 genomes]
rs28407987	0.89[EUR][1000 genomes]
rs28496913	0.81[EUR][1000 genomes]
rs28583826	0.95[EUR][1000 genomes]
rs28655135	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28689027	0.89[EUR][1000 genomes]
rs28766049	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28780379	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829645	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28888991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73832717	0.84[EUR][1000 genomes]
rs7636879	0.84[EUR][1000 genomes]
rs9810412	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815714	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9816050	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818484	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821284	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824691	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834432	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834759	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840027	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9842348	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843455	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844377	0.86[EUR][1000 genomes]
rs9844806	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859491	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867542	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867636	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9879781	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880997	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56248000-56254400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:56252000-56272200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56253400-56254600	Enhancers	Fetal Brain Female	brain
4	chr3:56253400-56254800	Enhancers	Brain Germinal Matrix	brain
5	chr3:56254000-56254400	Enhancers	Brain Substantia Nigra	brain
6	chr3:56254000-56254800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:56254000-56254800	Enhancers	Brain Anterior Caudate	brain
8	chr3:56254000-56254800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:56254000-56255000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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