Variant report

Variant	rs28780379
Chromosome Location	chr3:56248838-56248839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13323783	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13324556	0.90[EUR][1000 genomes]
rs1452206	0.90[EUR][1000 genomes]
rs1452207	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1519030	0.81[EUR][1000 genomes]
rs1519031	0.85[EUR][1000 genomes]
rs28397662	0.81[EUR][1000 genomes]
rs28407987	0.89[EUR][1000 genomes]
rs28496913	0.81[EUR][1000 genomes]
rs28583826	0.95[EUR][1000 genomes]
rs28655135	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28689027	0.89[EUR][1000 genomes]
rs28766049	0.85[EUR][1000 genomes]
rs28829645	0.81[EUR][1000 genomes]
rs28888991	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73832717	0.84[EUR][1000 genomes]
rs7636879	0.84[EUR][1000 genomes]
rs9810412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9815714	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816050	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818484	0.90[EUR][1000 genomes]
rs9821284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824691	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9834432	0.90[EUR][1000 genomes]
rs9834759	0.90[EUR][1000 genomes]
rs9840027	0.90[EUR][1000 genomes]
rs9842348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9843455	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844377	0.86[EUR][1000 genomes]
rs9844806	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9859491	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9865282	0.90[EUR][1000 genomes]
rs9867542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867636	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9878055	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9879781	0.95[EUR][1000 genomes]
rs9880997	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56248000-56254400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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