Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1466178	0.85[ASN][1000 genomes]
rs1519030	1.00[ASN][1000 genomes]
rs17056469	1.00[ASN][1000 genomes]
rs17056471	0.85[AMR][1000 genomes]
rs17056493	0.95[ASN][1000 genomes]
rs28397662	1.00[ASN][1000 genomes]
rs28407987	0.84[ASN][1000 genomes]
rs28485564	0.95[ASN][1000 genomes]
rs28496913	1.00[ASN][1000 genomes]
rs28689027	0.90[ASN][1000 genomes]
rs56141852	0.85[ASN][1000 genomes]
rs6788505	0.85[ASN][1000 genomes]
rs73078492	0.95[ASN][1000 genomes]
rs73078494	0.90[ASN][1000 genomes]
rs73091055	0.90[ASN][1000 genomes]
rs9811952	0.95[ASN][1000 genomes]
rs9816212	0.85[AMR][1000 genomes]
rs9820348	0.89[ASN][1000 genomes]
rs9824306	0.85[ASN][1000 genomes]
rs9830503	1.00[ASN][1000 genomes]
rs9835630	0.85[AMR][1000 genomes]
rs9843999	1.00[AMR][1000 genomes]
rs9844377	1.00[ASN][1000 genomes]
rs9853630	0.95[ASN][1000 genomes]
rs9862097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873343	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56144600-56152200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:56144800-56152400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:56146000-56151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56147200-56152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:56147400-56149600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:56147400-56152000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:56147600-56152400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:56147800-56152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:56148000-56152200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:56148200-56150400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:56149000-56152000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:56149400-56150000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:56149400-56150400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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