Variant report

Variant	rs9843999
Chromosome Location	chr3:56128653-56128654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13326443	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1519031	0.92[ASN][1000 genomes]
rs17056443	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17056445	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17056471	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17056472	0.92[ASN][1000 genomes]
rs7625220	0.92[ASN][1000 genomes]
rs7625230	0.92[ASN][1000 genomes]
rs7625422	0.92[ASN][1000 genomes]
rs7629769	0.92[ASN][1000 genomes]
rs7632887	0.92[ASN][1000 genomes]
rs7632901	0.92[ASN][1000 genomes]
rs9311597	1.00[AMR][1000 genomes]
rs9816212	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9820493	0.92[ASN][1000 genomes]
rs9821300	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827123	1.00[ASN][1000 genomes]
rs9833283	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9835630	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9844105	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9849230	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9855690	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9862067	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9862097	1.00[AMR][1000 genomes]
rs9863010	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9865563	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9880933	0.84[ASN][1000 genomes]
rs9881732	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56124400-56129600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:56128400-56131000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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