Variant report

Variant	rs9880933
Chromosome Location	chr3:56120551-56120552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13326443	1.00[AMR][1000 genomes]
rs17056443	1.00[AMR][1000 genomes]
rs17056445	1.00[AMR][1000 genomes]
rs9821300	1.00[AMR][1000 genomes]
rs9827123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9833283	1.00[AMR][1000 genomes]
rs9843999	0.84[ASN][1000 genomes]
rs9844105	1.00[AMR][1000 genomes]
rs9849230	1.00[AMR][1000 genomes]
rs9855690	1.00[AMR][1000 genomes]
rs9862067	1.00[AMR][1000 genomes]
rs9863010	1.00[AMR][1000 genomes]
rs9865563	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56120200-56120600	Enhancers	HSMMtube	muscle
2	chr3:56120200-56121000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:56120200-56121200	Enhancers	NHDF-Ad	bronchial
4	chr3:56120200-56121400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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