Variant report
| Variant | rs9827123 |
|---|---|
| Chromosome Location | chr3:56124501-56124502 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13326443 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1519031 | 0.92[ASN][1000 genomes] |
| rs17056443 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17056445 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17056471 | 0.92[ASN][1000 genomes] |
| rs17056472 | 0.92[ASN][1000 genomes] |
| rs7625220 | 0.92[ASN][1000 genomes] |
| rs7625230 | 0.92[ASN][1000 genomes] |
| rs7625422 | 0.92[ASN][1000 genomes] |
| rs7629769 | 0.92[ASN][1000 genomes] |
| rs7632887 | 0.92[ASN][1000 genomes] |
| rs7632901 | 0.92[ASN][1000 genomes] |
| rs9816212 | 0.92[ASN][1000 genomes] |
| rs9820493 | 0.92[ASN][1000 genomes] |
| rs9821300 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9833283 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9835630 | 0.92[ASN][1000 genomes] |
| rs9843999 | 1.00[ASN][1000 genomes] |
| rs9844105 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9849230 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9855690 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9862067 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9863010 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9865563 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9880933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9881732 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013063 | chr3:55835413-56173713 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009709 | chr3:56000827-56294945 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:56124400-56129600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
