Variant report

Variant	rs17056445
Chromosome Location	chr3:56146733-56146734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13326443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519031	1.00[ASN][1000 genomes]
rs17056443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056471	1.00[ASN][1000 genomes]
rs17056472	1.00[ASN][1000 genomes]
rs28655135	0.84[ASN][1000 genomes]
rs7625220	1.00[ASN][1000 genomes]
rs7625230	1.00[ASN][1000 genomes]
rs7625422	1.00[ASN][1000 genomes]
rs7629769	1.00[ASN][1000 genomes]
rs7632887	1.00[ASN][1000 genomes]
rs7632901	1.00[ASN][1000 genomes]
rs9816212	1.00[ASN][1000 genomes]
rs9820493	1.00[ASN][1000 genomes]
rs9821300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827123	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9833283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835630	1.00[ASN][1000 genomes]
rs9843999	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9844105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880933	1.00[AMR][1000 genomes]
rs9881732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56144600-56152200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:56144800-56146800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:56144800-56147000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:56144800-56147000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:56144800-56148200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56144800-56152400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:56145000-56147000	Enhancers	Brain Germinal Matrix	brain
8	chr3:56145000-56147200	Enhancers	Fetal Lung	lung
9	chr3:56145400-56147600	Weak transcription	Fetal Brain Male	brain
10	chr3:56145600-56147000	Enhancers	Fetal Stomach	stomach
11	chr3:56146000-56149200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:56146000-56151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:56146400-56148200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:56146600-56147600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:56146600-56147800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:56146600-56148000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:56146600-56149000	Weak transcription	H1 Cell Line	embryonic stem cell

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