Variant report

Variant	rs1519668
Chromosome Location	chr2:115554947-115554948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10180031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496475	0.99[ASN][1000 genomes]
rs10514813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519672	0.99[ASN][1000 genomes]
rs1996620	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2437455	0.85[ASN][1000 genomes]
rs319845	0.81[ASN][1000 genomes]
rs319847	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs319848	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs319849	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs319851	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs388581	0.85[ASN][1000 genomes]
rs6542221	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6542222	0.88[ASN][1000 genomes]
rs6542223	0.81[AFR][1000 genomes]
rs6723690	1.00[ASN][1000 genomes]
rs6736929	1.00[ASN][1000 genomes]
rs7585051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv582715	chr2:115495142-115573499	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv459019	chr2:115495142-115599013	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115554400-115555400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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