Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10180031	0.99[ASN][1000 genomes]
rs10188948	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10496475	1.00[ASN][1000 genomes]
rs10514813	1.00[ASN][1000 genomes]
rs11904812	0.90[AMR][1000 genomes]
rs1519668	0.99[ASN][1000 genomes]
rs1519669	0.99[ASN][1000 genomes]
rs2437455	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2574111	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs319845	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs319846	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs319850	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs319852	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs388581	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6542221	0.81[AMR][1000 genomes]
rs6542222	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6542223	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6723690	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6736929	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7568289	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7585051	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv431502	chr2:115139566-115617936	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv582715	chr2:115495142-115573499	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv459019	chr2:115495142-115599013	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1519672	ZC3H6	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115557000-115558400	Enhancers	Brain Hippocampus Middle	brain
2	chr2:115557000-115559200	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:115557200-115559200	Enhancers	Brain Substantia Nigra	brain
4	chr2:115557400-115559400	Enhancers	Brain Angular Gyrus	brain

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