Variant report

Variant	rs1519935
Chromosome Location	chr8:89211395-89211396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10107227	1.00[AMR][1000 genomes]
rs12550743	1.00[AMR][1000 genomes]
rs1879200	1.00[AMR][1000 genomes]
rs6469296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469306	1.00[AMR][1000 genomes]
rs6982189	1.00[AMR][1000 genomes]
rs7010490	1.00[AMR][1000 genomes]
rs7815828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841851	1.00[AMR][1000 genomes]
rs939277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89160800-89217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89177200-89214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:89177200-89216400	Weak transcription	Brain Germinal Matrix	brain
4	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:89196600-89214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:89196800-89214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:89201200-89218000	Weak transcription	Fetal Lung	lung
8	chr8:89204000-89219600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:89204200-89217200	Weak transcription	NH-A	brain
10	chr8:89208000-89215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:89208000-89217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:89208400-89211400	Enhancers	Fetal Intestine Large	intestine
13	chr8:89209400-89212400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:89210400-89211800	Enhancers	Fetal Brain Male	brain
15	chr8:89210600-89211600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:89210600-89211800	Enhancers	Fetal Brain Female	brain
17	chr8:89210600-89212600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:89210800-89211400	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr8:89211000-89211400	Enhancers	Fetal Kidney	kidney
20	chr8:89211000-89212600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:89211200-89212200	Weak transcription	Fetal Intestine Small	intestine

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