Variant report

Variant	rs6982189
Chromosome Location	chr8:89249106-89249107
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89247957..89250912-chr8:89288410..89290191,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10107227	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12550743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464279	0.82[AFR][1000 genomes]
rs1464280	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1519935	1.00[AMR][1000 genomes]
rs1519936	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1879200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2337520	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28904610	1.00[EUR][1000 genomes]
rs6469296	1.00[AMR][1000 genomes]
rs6469306	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992279	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7010490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815828	1.00[AMR][1000 genomes]
rs7833482	1.00[AMR][1000 genomes]
rs7841851	1.00[AMR][1000 genomes]
rs939277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3247	chr8:89248764-89249223	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2188156	chr8:89248826-89249301	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3479580	chr8:89248837-89249175	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3447847	chr8:89248870-89249270	Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3479579	chr8:89248898-89249179	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3479577	chr8:89248911-89249153	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3435276	chr8:89248943-89249126	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3479578	chr8:89248968-89249111	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3496762	chr8:89248978-89249109	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3479581	chr8:89248982-89249107	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3496763	chr8:89248982-89249107	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89239000-89260800	Weak transcription	Aorta	Aorta
2	chr8:89240200-89254800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:89240400-89254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:89243400-89254400	Weak transcription	Osteobl	bone
5	chr8:89243800-89250000	Weak transcription	NHDF-Ad	bronchial
6	chr8:89243800-89252200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:89245800-89250000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:89246000-89252200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:89246000-89254600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:89246000-89254800	Weak transcription	Fetal Lung	lung
11	chr8:89246000-89255400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:89247000-89252200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:89247200-89252200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:89247200-89255000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:89247400-89255600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:89247600-89250200	Weak transcription	Fetal Intestine Small	intestine
17	chr8:89248000-89249600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr8:89248200-89250800	Weak transcription	Right Ventricle	heart
19	chr8:89248600-89250400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:89248800-89250000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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