Variant report

Variant	rs1520570
Chromosome Location	chr3:54633847-54633848
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72874212	1.00[AMR][1000 genomes]
rs72874214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54633000-54635000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:54633200-54634600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:54633200-54634800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:54633400-54634200	Active TSS	Brain Anterior Caudate	brain
5	chr3:54633400-54634600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:54633400-54634600	Enhancers	Fetal Kidney	kidney
7	chr3:54633400-54634800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr3:54633400-54635000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:54633400-54635000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:54633400-54635600	Enhancers	Fetal Muscle Leg	muscle
11	chr3:54633600-54634400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:54633600-54634400	Active TSS	Stomach Smooth Muscle	stomach
13	chr3:54633600-54634600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:54633600-54634600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:54633600-54635000	Enhancers	Brain Germinal Matrix	brain
16	chr3:54633600-54635200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:54633800-54634000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:54633800-54634000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr3:54633800-54634000	Enhancers	Brain Hippocampus Middle	brain
20	chr3:54633800-54634000	Bivalent Enhancer	Fetal Brain Male	brain
21	chr3:54633800-54634000	Enhancers	Fetal Muscle Trunk	muscle
22	chr3:54633800-54634000	Active TSS	Psoas Muscle	Psoas
23	chr3:54633800-54634000	Enhancers	HMEC	breast
24	chr3:54633800-54634200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr3:54633800-54634200	Flanking Active TSS	Ovary	ovary
26	chr3:54633800-54634600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:54633800-54634800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:54633800-54634800	Active TSS	Brain Angular Gyrus	brain
29	chr3:54633800-54635000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:54633800-54635000	Enhancers	Fetal Brain Female	brain
31	chr3:54633800-54635000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr3:54633800-54635200	Enhancers	Brain Inferior Temporal Lobe	brain

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