Variant report

Variant	rs1521299
Chromosome Location	chr3:118610729-118610730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12497274	0.81[ASN][1000 genomes]
rs1521296	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs251456	0.82[JPT][hapmap]
rs35872	0.93[JPT][hapmap]
rs35874	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs6438476	0.95[ASN][1000 genomes]
rs6794562	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325350	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs859021	0.85[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:118604400-118620000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
6	chr3:118606400-118613200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:118608400-118621400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:118609400-118611200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:118610000-118618200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:118610200-118613600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:118610600-118610800	Flanking Active TSS	Aorta	Aorta
12	chr3:118610600-118612800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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