Variant report

Variant	rs1522451
Chromosome Location	chr4:149032270-149032271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149023492..149025087-chr4:149031685..149033521,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17024387	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4027073	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835478	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4835480	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4835482	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4835484	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7672951	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9998790	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:149002600-149036600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
5	chr4:149012600-149037400	Weak transcription	NHLF	lung
6	chr4:149013200-149034800	Weak transcription	Brain Angular Gyrus	brain
7	chr4:149013600-149034600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:149015600-149037600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
10	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
12	chr4:149022800-149034600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:149023400-149034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:149024000-149041000	Weak transcription	Fetal Kidney	kidney
15	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
16	chr4:149024600-149040200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:149024800-149039000	Weak transcription	Gastric	stomach
18	chr4:149026000-149037600	Weak transcription	Fetal Lung	lung
19	chr4:149026200-149032800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:149026200-149039200	Weak transcription	Psoas Muscle	Psoas
21	chr4:149026200-149042000	Weak transcription	Fetal Heart	heart
22	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:149028000-149033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:149028800-149036800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:149029200-149032400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:149029200-149033200	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:149029400-149032800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr4:149029400-149035600	Strong transcription	Adipose Nuclei	Adipose
30	chr4:149029400-149036200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:149029400-149036800	Weak transcription	HUVEC	blood vessel
32	chr4:149029400-149038400	Weak transcription	Thymus	Thymus
33	chr4:149029600-149036200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr4:149030000-149036200	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:149030200-149033400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:149030600-149034800	Weak transcription	Spleen	Spleen
37	chr4:149030600-149037400	Weak transcription	Fetal Stomach	stomach
38	chr4:149030600-149037600	Weak transcription	Fetal Intestine Small	intestine
39	chr4:149030600-149038200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:149030600-149038400	Weak transcription	Aorta	Aorta
41	chr4:149030600-149038400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:149030600-149038800	Weak transcription	Colonic Mucosa	Colon
43	chr4:149030600-149039400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:149030800-149032400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:149030800-149032800	Weak transcription	HSMM	muscle
46	chr4:149030800-149034800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr4:149030800-149039000	Weak transcription	Pancreas	Pancrea
48	chr4:149030800-149039200	Weak transcription	Brain Anterior Caudate	brain
49	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:149031000-149033200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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