Variant report

Variant	rs17024387
Chromosome Location	chr4:149024260-149024261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149023492..149025087-chr4:149031685..149033521,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13137823	0.86[MEX][hapmap]
rs1522451	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4027073	0.96[CEU][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4835478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835480	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835482	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835483	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835484	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823323	0.83[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7672951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998790	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17024387	ARHGAP10	cis	lymphoblastoid	seeQTL

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148992200-149035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:148997800-149028800	Weak transcription	Pancreas	Pancrea
3	chr4:148998400-149032600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:148999200-149029600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:148999600-149024400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:149002200-149029400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:149002600-149036600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:149003000-149028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:149003000-149029200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:149003200-149025400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:149003400-149027200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:149003800-149029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:149004000-149029200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
15	chr4:149012600-149029600	Weak transcription	Colonic Mucosa	Colon
16	chr4:149012600-149037400	Weak transcription	NHLF	lung
17	chr4:149013000-149024400	Weak transcription	Gastric	stomach
18	chr4:149013200-149034800	Weak transcription	Brain Angular Gyrus	brain
19	chr4:149013400-149025600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:149013400-149028800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:149013600-149029400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:149013600-149034600	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:149014400-149029600	Weak transcription	Spleen	Spleen
24	chr4:149014600-149029400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:149014600-149029400	Weak transcription	Lung	lung
26	chr4:149015400-149029600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:149015600-149037600	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:149016600-149026400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr4:149017000-149029800	Weak transcription	Ovary	ovary
30	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
31	chr4:149020600-149029800	Weak transcription	Aorta	Aorta
32	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:149022200-149024400	Strong transcription	Liver	Liver
34	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
35	chr4:149022800-149034600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:149023000-149024800	Strong transcription	Stomach Smooth Muscle	stomach
37	chr4:149023000-149026400	Strong transcription	Duodenum Mucosa	Duodenum
38	chr4:149023000-149026400	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr4:149023000-149026600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:149023200-149024800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:149023200-149024800	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:149023400-149024600	Strong transcription	Fetal Intestine Small	intestine
43	chr4:149023400-149025000	Strong transcription	Fetal Stomach	stomach
44	chr4:149023400-149025200	Enhancers	Right Atrium	heart
45	chr4:149023400-149026200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:149023400-149029600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr4:149023400-149034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr4:149023600-149025000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:149023800-149026200	Strong transcription	Fetal Muscle Leg	muscle
50	chr4:149023800-149026200	Enhancers	Left Ventricle	heart

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