Variant report

Variant	rs1523008
Chromosome Location	chr4:149758060-149758061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11099711	0.95[ASN][1000 genomes]
rs12647179	0.80[ASN][1000 genomes]
rs1523004	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1523005	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17584189	0.86[AFR][1000 genomes]
rs1916243	0.83[AFR][1000 genomes]
rs1983422	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2103065	0.85[AFR][1000 genomes]
rs4240350	0.82[AFR][1000 genomes]
rs4835546	0.83[AFR][1000 genomes]
rs7673507	0.95[ASN][1000 genomes]
rs7695284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695802	0.87[AFR][1000 genomes]
rs853720	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853721	0.97[ASN][1000 genomes]
rs868064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952260	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149756600-149763800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:149756800-149758200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:149756800-149758400	Weak transcription	HMEC	breast
4	chr4:149756800-149758400	Weak transcription	NHEK	skin
5	chr4:149756800-149763800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:149757200-149758400	Weak transcription	HUVEC	blood vessel
7	chr4:149758000-149759200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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