Variant report

Variant	rs952260
Chromosome Location	chr4:149743717-149743718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11099711	0.88[ASN][1000 genomes]
rs12647179	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1523004	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1523005	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1523008	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1983422	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7673507	0.83[ASN][1000 genomes]
rs7695284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs853720	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs853721	0.85[ASN][1000 genomes]
rs868064	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs952260	LSM6	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149741400-149745000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:149742600-149743800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:149743400-149743800	Weak transcription	Stomach Mucosa	stomach
4	chr4:149743600-149744000	Enhancers	Fetal Heart	heart
5	chr4:149743600-149745200	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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