Variant report
| Variant | rs1523804 |
|---|---|
| Chromosome Location | chr7:118429461-118429462 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:118427690..118429763-chr7:118433666..118436631,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1320850 | 1.00[EUR][1000 genomes] |
| rs1881868 | 1.00[EUR][1000 genomes] |
| rs1881869 | 1.00[EUR][1000 genomes] |
| rs1919918 | 1.00[EUR][1000 genomes] |
| rs2222814 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2222815 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590583 | 1.00[EUR][1000 genomes] |
| rs2590586 | 1.00[EUR][1000 genomes] |
| rs2590587 | 1.00[EUR][1000 genomes] |
| rs2590601 | 1.00[EUR][1000 genomes] |
| rs2590620 | 1.00[EUR][1000 genomes] |
| rs2590642 | 1.00[EUR][1000 genomes] |
| rs2590643 | 1.00[EUR][1000 genomes] |
| rs2699733 | 1.00[EUR][1000 genomes] |
| rs2699735 | 1.00[EUR][1000 genomes] |
| rs2699737 | 1.00[EUR][1000 genomes] |
| rs2699749 | 1.00[EUR][1000 genomes] |
| rs2699754 | 1.00[EUR][1000 genomes] |
| rs2699758 | 1.00[EUR][1000 genomes] |
| rs2699760 | 1.00[EUR][1000 genomes] |
| rs2699766 | 1.00[EUR][1000 genomes] |
| rs2699767 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889093 | chr7:117977091-118709754 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv831109 | chr7:118300593-118501778 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:118428600-118432600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
