Variant report
| Variant | rs2590586 |
|---|---|
| Chromosome Location | chr7:118456859-118456860 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:118445682..118447696-chr7:118455521..118457653,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10270202 | 1.00[EUR][1000 genomes] |
| rs1320850 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1523804 | 1.00[EUR][1000 genomes] |
| rs1881868 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1881869 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1919918 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2204779 | 0.83[AMR][1000 genomes] |
| rs2222814 | 1.00[EUR][1000 genomes] |
| rs2222815 | 1.00[EUR][1000 genomes] |
| rs2246466 | 0.83[AMR][1000 genomes] |
| rs2590583 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590593 | 0.83[AMR][1000 genomes] |
| rs2590601 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590602 | 0.83[AMR][1000 genomes] |
| rs2590620 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590642 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2590643 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2689718 | 0.83[AMR][1000 genomes] |
| rs2699700 | 0.83[AMR][1000 genomes] |
| rs2699707 | 0.83[AMR][1000 genomes] |
| rs2699733 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2699735 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2699737 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2699749 | 1.00[EUR][1000 genomes] |
| rs2699754 | 1.00[EUR][1000 genomes] |
| rs2699758 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2699760 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2699766 | 1.00[EUR][1000 genomes] |
| rs2699767 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889093 | chr7:117977091-118709754 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv831109 | chr7:118300593-118501778 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv889096 | chr7:118438184-118709754 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1021902 | chr7:118452600-118719244 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:118456000-118458200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
