Variant report

Variant	rs1523813
Chromosome Location	chr7:118243286-118243287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1606003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704940	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704941	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704945	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704946	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1704948	0.98[ASN][1000 genomes]
rs1721210	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1721227	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778836	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs778877	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778881	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118239400-118249200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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