Variant report
| Variant | rs1606003 |
|---|---|
| Chromosome Location | chr7:118229325-118229326 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117822617..117825221-chr7:118228070..118230424,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128534 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1523813 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1704940 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1704941 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1704945 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1704946 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1704948 | 0.98[ASN][1000 genomes] |
| rs1721210 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1721227 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs778836 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs778877 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs778881 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs778886 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv889093 | chr7:117977091-118709754 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
