Variant report

Variant	rs1523932
Chromosome Location	chr6:69480408-69480409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69475601..69477760-chr6:69479099..69481855,2	K562	blood:
2	chr6:69479313..69482227-chr6:69485193..69487773,3	K562	blood:
3	chr6:69479313..69481691-chr6:69485193..69486882,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10806605	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10945134	0.81[MEX][hapmap]
rs12194992	0.94[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1523931	0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2024561	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2254150	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2256337	0.82[CHB][hapmap]
rs2585593	0.94[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap]
rs2585594	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs2585618	0.82[CHB][hapmap]
rs2746126	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2802699	0.81[CHB][hapmap]
rs2802705	0.82[CHB][hapmap]
rs478070	0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes]
rs530888	0.96[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs639338	0.96[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs6902378	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908159	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs9342730	0.94[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap]
rs9342731	0.94[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap]
rs9346233	0.94[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap]
rs9346234	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs9346237	0.96[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs9346238	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs9351734	0.94[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap]
rs9351735	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9351736	0.90[JPT][hapmap]
rs9363966	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs992785	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69471600-69481600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:69478000-69485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69479800-69480600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:69480000-69481800	Enhancers	Brain Substantia Nigra	brain
6	chr6:69480000-69482600	Enhancers	Brain Angular Gyrus	brain
7	chr6:69480400-69481600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69480400-69484800	Weak transcription	Fetal Lung	lung

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