Variant report

Variant	rs2746126
Chromosome Location	chr6:69402445-69402446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69396018..69398717-chr6:69401123..69403909,3	K562	blood:
2	chr6:69397594..69401591-chr6:69402170..69406294,3	K562	blood:
3	chr6:69399688..69402508-chr6:69408019..69410089,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10806605	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10945134	0.91[JPT][hapmap]
rs12194992	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12196021	0.82[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs12197039	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523931	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1523932	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2024561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2254150	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256337	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2585593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585594	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585618	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2746129	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2802699	0.80[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2802705	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs28395490	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4554295	0.91[JPT][hapmap]
rs4607402	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs478070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs530888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs639338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6455297	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6930275	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753280	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9342729	0.82[JPT][hapmap]
rs9342730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9342731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9346233	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346234	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9346236	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9346237	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs9346238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9351734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9351735	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9354797	0.92[ASN][1000 genomes]
rs9363962	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69399400-69403800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:69400200-69405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69400400-69405400	Weak transcription	Fetal Lung	lung
5	chr6:69400400-69407000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:69401400-69403000	Weak transcription	K562	blood
7	chr6:69401400-69405600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69401400-69406600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:69401400-69406600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:69401400-69406800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:69401600-69405200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69401600-69406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:69402200-69405600	Weak transcription	Brain Inferior Temporal Lobe	brain

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