Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10945134	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12194992	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12196021	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12197039	0.80[ASN][1000 genomes]
rs2024561	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2254150	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2256337	1.00[JPT][hapmap]
rs2585593	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2585594	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2585618	1.00[JPT][hapmap]
rs2746126	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2746129	0.80[ASN][1000 genomes]
rs2802699	1.00[JPT][hapmap]
rs2802705	0.83[JPT][hapmap]
rs28395490	0.80[ASN][1000 genomes]
rs4554295	1.00[JPT][hapmap]
rs478070	0.91[JPT][hapmap]
rs530888	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs639338	0.91[JPT][hapmap]
rs6455297	0.80[ASN][1000 genomes]
rs6908159	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs6930275	0.80[ASN][1000 genomes]
rs9342729	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9342730	0.91[JPT][hapmap]
rs9342731	0.91[JPT][hapmap]
rs9346233	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9346234	0.91[JPT][hapmap]
rs9346237	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9346238	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs9351734	0.91[JPT][hapmap]
rs9351736	0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes]
rs9363962	0.90[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69379200-69396200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69383200-69400000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69383600-69396000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69388400-69393600	Weak transcription	K562	blood
8	chr6:69388400-69399800	Weak transcription	Fetal Lung	lung
9	chr6:69389600-69399800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:69393400-69399800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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