Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69362720..69364963-chr6:69399822..69401400,2	K562	blood:
2	chr6:69398238..69400997-chr6:69423873..69426595,2	K562	blood:
3	chr6:69397594..69401591-chr6:69402170..69406294,3	K562	blood:
4	chr6:69399688..69402508-chr6:69408019..69410089,2	K562	blood:
5	chr6:69399809..69401625-chr6:69437402..69440315,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL713998.1-7	chr6:69400798-69401622	l_3201_chr6:69396542-69401446_brain

No data

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945134	0.90[JPT][hapmap]
rs12194992	0.83[JPT][hapmap]
rs12196021	0.91[JPT][hapmap]
rs2024561	0.82[JPT][hapmap]
rs2254150	0.82[JPT][hapmap]
rs2256337	0.90[JPT][hapmap]
rs2585593	0.82[JPT][hapmap]
rs2585594	0.83[JPT][hapmap]
rs2585618	0.90[JPT][hapmap]
rs2746126	0.82[JPT][hapmap]
rs2802699	1.00[JPT][hapmap]
rs4554295	0.91[JPT][hapmap]
rs4607402	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs478070	0.82[JPT][hapmap]
rs530888	0.83[JPT][hapmap]
rs639338	0.82[JPT][hapmap]
rs6908159	0.82[JPT][hapmap]
rs9342729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9342730	0.82[JPT][hapmap]
rs9342731	0.83[JPT][hapmap]
rs9346233	0.82[JPT][hapmap]
rs9346234	0.83[JPT][hapmap]
rs9346237	0.90[JPT][hapmap]
rs9346238	0.83[JPT][hapmap]
rs9351734	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69398800-69401600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:69399400-69403800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:69399600-69401600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69399800-69401200	Enhancers	Brain Angular Gyrus	brain
5	chr6:69399800-69401400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:69399800-69401400	Enhancers	Brain Anterior Caudate	brain
7	chr6:69399800-69401400	Enhancers	Brain Hippocampus Middle	brain
8	chr6:69400000-69401200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:69400200-69405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69400400-69401000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:69400400-69401200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:69400400-69401400	Enhancers	K562	blood
14	chr6:69400400-69405400	Weak transcription	Fetal Lung	lung
15	chr6:69400400-69407000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:69400600-69401000	Weak transcription	Brain Inferior Temporal Lobe	brain

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