Variant report

Variant	rs4554295
Chromosome Location	chr6:69352401-69352402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69349831..69353456-chr6:69358636..69362534,5	K562	blood:
2	chr6:69351017..69353999-chr6:69369365..69372357,2	K562	blood:
3	chr6:69346849..69353858-chr6:69356877..69365508,11	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10945133	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10945134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10945135	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12194992	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12196021	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs12198214	0.84[CEU][hapmap]
rs2024561	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs2248272	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2254150	0.91[JPT][hapmap]
rs2256337	0.92[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2341765	0.99[ASN][1000 genomes]
rs2585593	0.91[JPT][hapmap]
rs2585594	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs2585605	0.87[EUR][1000 genomes]
rs2585616	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585618	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2585619	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585620	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2746126	0.91[JPT][hapmap]
rs2802690	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2802699	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802702	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2802703	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802704	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802705	0.96[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802706	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2802710	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4607402	1.00[JPT][hapmap]
rs478070	0.91[JPT][hapmap]
rs530888	0.91[JPT][hapmap]
rs639338	0.91[JPT][hapmap]
rs6908159	0.91[JPT][hapmap]
rs7743914	0.82[EUR][1000 genomes]
rs7754547	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs9342729	0.90[JPT][hapmap]
rs9342730	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs9342731	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs9346233	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs9346234	0.91[JPT][hapmap]
rs9346237	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9346238	0.91[JPT][hapmap]
rs9351734	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs9351736	0.81[JPT][hapmap]
rs9363962	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69348600-69352800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
3	chr6:69350800-69352800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
5	chr6:69351000-69353800	Enhancers	Brain Substantia Nigra	brain
6	chr6:69351200-69353000	Weak transcription	K562	blood
7	chr6:69351400-69352800	Weak transcription	Fetal Brain Male	brain
8	chr6:69351400-69353000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69351600-69352800	Weak transcription	Fetal Lung	lung
10	chr6:69351600-69353000	Enhancers	Brain Hippocampus Middle	brain
11	chr6:69351600-69353600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:69352200-69353000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:69352200-69353000	Enhancers	Brain Anterior Caudate	brain
14	chr6:69352200-69353000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:69352200-69353000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
17	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:69352400-69353400	Active TSS	Brain Angular Gyrus	brain
19	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain

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