Variant report

Variant	rs10945135
Chromosome Location	chr6:69356379-69356380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10945134	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248272	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2256337	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2341765	1.00[ASN][1000 genomes]
rs2585605	0.85[EUR][1000 genomes]
rs2585616	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585618	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2585619	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585620	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802690	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2802699	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802702	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2802703	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802704	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802705	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802706	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802710	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4554295	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
2	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
5	chr6:69353200-69359600	Weak transcription	Fetal Brain Male	brain
6	chr6:69353400-69356600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69353600-69359600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:69353600-69359600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:69353600-69359600	Weak transcription	K562	blood
10	chr6:69353800-69356600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:69353800-69358400	Weak transcription	Brain Substantia Nigra	brain
12	chr6:69354800-69357600	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:69354800-69358000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:69355000-69359600	Weak transcription	Fetal Lung	lung
15	chr6:69355600-69356600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:69355600-69359600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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