Variant report
| Variant | rs2585620 |
|---|---|
| Chromosome Location | chr6:69333897-69333898 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:69333513..69336607-chr6:69343199..69345941,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135298 | Chromatin interaction |
| ENSG00000230910 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10945133 | 0.82[EUR][1000 genomes] |
| rs10945134 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10945135 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2248272 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2256337 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2341765 | 0.81[ASN][1000 genomes] |
| rs2585605 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2585616 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2585618 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2585619 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2802690 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2802699 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2802702 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2802703 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2802704 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2802705 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2802706 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2802710 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4554295 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7743914 | 0.82[EUR][1000 genomes] |
| rs7754547 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830680 | chr6:69192214-69351103 | Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
