Variant report

Variant	rs10945133
Chromosome Location	chr6:69354524-69354525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10945134	1.00[ASW][hapmap];0.82[EUR][1000 genomes]
rs12198214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12201914	0.89[AFR][1000 genomes]
rs12211047	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs12216491	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17198341	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs2585619	0.81[EUR][1000 genomes]
rs2585620	0.82[EUR][1000 genomes]
rs2802690	0.81[EUR][1000 genomes]
rs2802704	0.83[EUR][1000 genomes]
rs2802705	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs4554295	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7743914	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754547	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9346237	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
2	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
3	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
6	chr6:69353200-69359600	Weak transcription	Fetal Brain Male	brain
7	chr6:69353400-69356600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:69353600-69354600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69353600-69354600	Weak transcription	Fetal Lung	lung
10	chr6:69353600-69354800	Enhancers	Brain Hippocampus Middle	brain
11	chr6:69353600-69355000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:69353600-69359600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69353600-69359600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:69353600-69359600	Weak transcription	K562	blood
15	chr6:69353800-69355400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:69353800-69356600	Weak transcription	Brain Anterior Caudate	brain
17	chr6:69353800-69358400	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links