Variant report

Variant	rs17198341
Chromosome Location	chr6:69468895-69468896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10806605	0.80[CEU][hapmap]
rs10945133	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs12198214	1.00[CHB][hapmap]
rs12201914	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12210824	1.00[CHB][hapmap]
rs12211047	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7743914	0.83[AFR][1000 genomes]
rs7754547	1.00[CHB][hapmap]
rs9346237	0.84[CEU][hapmap]
rs9351735	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69463400-69470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69464000-69469000	Enhancers	Brain Substantia Nigra	brain
3	chr6:69467000-69470000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69467200-69470800	Weak transcription	Fetal Brain Male	brain
5	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69467400-69470000	Weak transcription	Fetal Brain Female	brain
7	chr6:69467800-69469000	Enhancers	Brain Anterior Caudate	brain
8	chr6:69468200-69469000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:69468400-69480000	Weak transcription	Fetal Lung	lung
10	chr6:69468600-69469000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:69468600-69469000	Enhancers	K562	blood
12	chr6:69468600-69470000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:69468800-69470000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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