Variant report

Variant	rs7743914
Chromosome Location	chr6:69351498-69351499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10945133	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10945134	0.82[EUR][1000 genomes]
rs12198214	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12201914	0.89[AFR][1000 genomes]
rs12216491	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17198341	0.83[AFR][1000 genomes]
rs2585619	0.81[EUR][1000 genomes]
rs2585620	0.82[EUR][1000 genomes]
rs2802690	0.81[EUR][1000 genomes]
rs2802704	0.83[EUR][1000 genomes]
rs2802705	0.80[EUR][1000 genomes]
rs4554295	0.82[EUR][1000 genomes]
rs7754547	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69343200-69352000	Active TSS	Brain Anterior Caudate	brain
2	chr6:69348600-69352800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:69349600-69351600	Flanking Active TSS	Fetal Brain Female	brain
4	chr6:69350000-69352200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
6	chr6:69350800-69352800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
8	chr6:69351000-69351600	Active TSS	Brain Germinal Matrix	brain
9	chr6:69351000-69352200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69351000-69353800	Enhancers	Brain Substantia Nigra	brain
11	chr6:69351200-69351600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr6:69351200-69351600	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr6:69351200-69351600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:69351200-69351600	Flanking Active TSS	Fetal Lung	lung
15	chr6:69351200-69353000	Weak transcription	K562	blood
16	chr6:69351400-69352000	Enhancers	Brain Angular Gyrus	brain
17	chr6:69351400-69352200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:69351400-69352800	Weak transcription	Fetal Brain Male	brain
19	chr6:69351400-69353000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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