Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:69336943..69339880-chr6:69343535..69346281,2	K562	blood:
2	chr6:69338380..69340978-chr6:69343535..69346308,3	K562	blood:
3	chr6:69331296..69333706-chr6:69336938..69339590,2	K562	blood:

Variant related genes	Relation type
ENSG00000230910	Chromatin interaction
ENSG00000135298	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10945133	0.83[EUR][1000 genomes]
rs10945134	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10945135	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12198214	0.81[EUR][1000 genomes]
rs2248272	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2256337	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2341765	0.81[ASN][1000 genomes]
rs2585605	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585616	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585618	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585619	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585620	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802690	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802699	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802702	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802703	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802705	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802706	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802710	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4554295	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7743914	0.83[EUR][1000 genomes]
rs7754547	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69336600-69342600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69338200-69342200	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: