Variant report

Variant	rs2802702
Chromosome Location	chr6:69342415-69342416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10945134	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10945135	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2248272	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2256337	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2585605	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585616	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585618	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585619	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585620	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802690	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802699	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2802703	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802704	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802705	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802706	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802710	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4554295	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69336600-69342600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69340600-69342600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69340800-69342600	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69342200-69342600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69342200-69342800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:69342400-69342600	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:69342400-69342600	Active TSS	Fetal Brain Female	brain
8	chr6:69342400-69342800	Flanking Active TSS	Fetal Brain Male	brain
9	chr6:69342400-69343000	Enhancers	Brain Anterior Caudate	brain
10	chr6:69342400-69343200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:69342400-69343400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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