Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:69361875..69366635-chr6:69366839..69371569,10	K562	blood:
2	chr6:69365593..69367286-chr6:69425025..69427900,2	K562	blood:
3	chr6:69359830..69361786-chr6:69366952..69369781,2	K562	blood:
4	chr6:69348060..69348852-chr6:69366971..69367722,2	K562	blood:
5	chr6:69364943..69367696-chr6:69378038..69379934,2	K562	blood:
6	chr6:69364690..69367306-chr6:69368059..69370561,2	K562	blood:
7	chr6:69359484..69364655-chr6:69364836..69370262,9	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10945133	0.81[EUR][1000 genomes]
rs10945134	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10945135	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2248272	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2256337	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585605	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2585616	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585618	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585619	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585620	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802699	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2802702	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802703	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802704	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802705	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802706	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2802710	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4554295	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7743914	0.81[EUR][1000 genomes]
rs7754547	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69362400-69367600	Enhancers	Brain Substantia Nigra	brain
3	chr6:69363000-69369600	Weak transcription	Fetal Brain Male	brain
4	chr6:69363400-69367200	Active TSS	K562	blood
5	chr6:69363800-69368400	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:69364200-69367400	Enhancers	Brain Angular Gyrus	brain
7	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:69366400-69367800	Enhancers	Fetal Lung	lung
10	chr6:69366600-69367400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:69366600-69368400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:69366800-69368400	Enhancers	Brain Anterior Caudate	brain
13	chr6:69367000-69367600	Enhancers	Brain Hippocampus Middle	brain
14	chr6:69367000-69367600	Enhancers	Brain Inferior Temporal Lobe	brain

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