Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:69403827..69406066-chr6:69418445..69421637,3	K562	blood:
2	chr6:69397594..69401591-chr6:69402170..69406294,3	K562	blood:
3	chr6:69361193..69363364-chr6:69405270..69407471,2	K562	blood:
4	chr6:69361193..69364307-chr6:69405003..69407471,3	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945134	0.90[JPT][hapmap]
rs12194992	0.82[JPT][hapmap]
rs12196021	0.90[JPT][hapmap]
rs2024561	0.82[JPT][hapmap]
rs2254150	0.82[JPT][hapmap]
rs2256337	0.90[JPT][hapmap]
rs2585593	0.82[JPT][hapmap]
rs2585594	0.82[JPT][hapmap]
rs2585618	0.90[JPT][hapmap]
rs2746126	0.82[JPT][hapmap]
rs2802699	1.00[JPT][hapmap]
rs4554295	0.90[JPT][hapmap]
rs4607402	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs478070	0.82[JPT][hapmap]
rs530888	0.82[JPT][hapmap]
rs639338	0.82[JPT][hapmap]
rs6908159	0.82[JPT][hapmap]
rs9342730	0.82[JPT][hapmap]
rs9342731	0.82[JPT][hapmap]
rs9346233	0.82[JPT][hapmap]
rs9346234	0.82[JPT][hapmap]
rs9346237	0.90[JPT][hapmap]
rs9346238	0.82[JPT][hapmap]
rs9351734	0.82[JPT][hapmap]
rs9363962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69400200-69405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:69400400-69407000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69401400-69405600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69401400-69406600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69401400-69406600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69401400-69406800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:69401600-69406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:69402200-69405600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:69405200-69407400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:69405400-69406200	Flanking Active TSS	K562	blood
12	chr6:69405400-69407000	Enhancers	Fetal Lung	lung

Quick Search: