Variant report

Variant	rs12197039
Chromosome Location	chr6:69457985-69457986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69457273..69460915-chr6:69461599..69464794,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12194992	0.97[ASN][1000 genomes]
rs1523931	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024561	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254150	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585593	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585594	0.97[ASN][1000 genomes]
rs2746126	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746129	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28395490	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607402	0.80[ASN][1000 genomes]
rs478070	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs530888	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639338	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6455297	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908159	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930275	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753280	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9342730	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342731	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346233	0.97[ASN][1000 genomes]
rs9346234	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9346236	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346237	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9346238	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351734	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351735	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9354797	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
2	chr6:69457400-69466000	Weak transcription	Fetal Brain Female	brain
3	chr6:69457400-69466400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69457600-69460600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69457600-69460600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:69457600-69464000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69457800-69460800	Weak transcription	Brain Cingulate Gyrus	brain

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