Variant report

Variant	rs7753280
Chromosome Location	chr6:69432328-69432329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69411544..69413499-chr6:69432227..69434034,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12194992	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12196021	0.84[EUR][1000 genomes]
rs12197039	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1523931	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024561	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2254150	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2585593	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2585594	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746126	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2746129	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28395490	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs478070	0.98[ASN][1000 genomes]
rs530888	0.99[ASN][1000 genomes]
rs639338	1.00[ASN][1000 genomes]
rs6455297	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6908159	0.99[ASN][1000 genomes]
rs6930275	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9342730	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9342731	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346233	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346234	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346236	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346237	0.82[ASN][1000 genomes]
rs9346238	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351734	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351735	0.93[ASN][1000 genomes]
rs9354797	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69428800-69435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69429000-69432800	Weak transcription	Fetal Lung	lung
4	chr6:69429000-69435400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69429000-69435400	Weak transcription	Fetal Brain Female	brain
6	chr6:69429200-69434000	Weak transcription	NHDF-Ad	bronchial
7	chr6:69429200-69435400	Weak transcription	Fetal Brain Male	brain
8	chr6:69430200-69432800	Weak transcription	Fetal Heart	heart
9	chr6:69430200-69432800	Weak transcription	K562	blood

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